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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49309630_49309884_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49309630 - 49309884
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTACT
5'SS Class:
major
3'SS Sequence:
TGTTTTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTATACA
Flanking Amino Acid:
LRIVEPYVAWGYPNLKSVRE
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
75.3
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.1
0.79
0.9
80.6
36.1
Minor 5ss
36.5
-1.5
3
43.6
43.6
Minor BPS
49.7
-0
1.9
66.95
39.5

Associated Gene:

Gene:
RPL7L1
Ensembl Gene ID:
ENSAPLG00000013503
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014101
49307811 - 49310817
3007