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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49309995_49310220_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49309995 - 49310220
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATTTTATT
Flanking Amino Acid:
TDNMLIEEHLGNFGIICLED
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
55.3
0.25
1.8
78.34
37.7

Associated Gene:

Gene:
RPL7L1
Ensembl Gene ID:
ENSAPLG00000013503
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014101
49307811 - 49310817
3007