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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49310434_49310674_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
49310434 - 49310674
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTAATTTTAGTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
56.4
0.28
1.5
72.87
38.5

Associated Gene:

Gene:
RPL7L1
Ensembl Gene ID:
ENSAPLG00000013503
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014101
49307811 - 49310817
3007