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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49314313_49314395_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
49314313 - 49314395
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCCGGG
5'SS Class:
weak_major
3'SS Sequence:
CTGCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
CCGCCGCTAACT
Flanking Amino Acid:
YLNNVVEQMKEWLCKCLVQR
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.9
0.21
1.2
45.2
44.9
Major BPS
57.1
0.18
1.1
59
36
Major PPT
83
0.74
0.8
80.6
31.5
Minor 5ss
34.8
-1.7
3.5
46.9
48.5
Minor BPS
44.8
-0.3
2.3
61.63
47.8

Associated Gene:

Gene:
MAD2L1
Ensembl Gene ID:
ENSAPLG00000013807
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045160
49312715 - 49314659
1945