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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49366365_49368137_F

Intron Information:

Intron Rank:
147566
Intron Class:
major
Intron Phase:
Intron Coordinates:
49366365 - 49368137
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGCT
5'SS Class:
major
3'SS Sequence:
TTTTCTGATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGTGCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
65.2
39
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.8
0.71
0.9
77.5
35.8
Minor 5ss
31.8
-2.1
3.7
44.6
44.4
Minor BPS
61.5
0.44
1.8
76.81
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029459
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040365
49365838 - 49369135
3298