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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49372164_49377078_F

Intron Information:

Intron Rank:
144099
Intron Class:
major
Intron Phase:
Intron Coordinates:
49372164 - 49377078
Intron Length:
4915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
68.1
36.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
38
-1.4
3.2
50.7
46.2
Minor BPS
52.6
0.16
2.2
82.08
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027669
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036154
49372034 - 49381365
9332