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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49377165_49380860_F

Intron Information:

Intron Rank:
144100
Intron Class:
major
Intron Phase:
Intron Coordinates:
49377165 - 49380860
Intron Length:
3696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
CCTTTCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GATTTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.4
0.62
0.8
73.3
30.3
Minor 5ss
33.2
-1.9
3.5
45.9
44.6
Minor BPS
74.8
0.76
1.1
75.85
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027669
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036154
49372034 - 49381365
9332