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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49384525_49385762_F

Intron Information:

Intron Rank:
146895
Intron Class:
major
Intron Phase:
Intron Coordinates:
49384525 - 49385762
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTATAATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
84.7
0.78
0.8
79.6
32.4
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
46.7
-0.1
1.9
69.28
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029122
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026684
49383180 - 49386106
2927