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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49437229_49439507_R

Intron Information:

Intron Rank:
149664
Intron Class:
major
Intron Phase:
Intron Coordinates:
49437229 - 49439507
Intron Length:
2279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCTAA
5'SS Class:
major
3'SS Sequence:
ATATATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
65.2
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.9
0.7
0.9
77.8
40.4
Minor 5ss
45.4
-0.5
2.9
61
44.7
Minor BPS
55.5
0.25
1.6
71.35
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028053
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028420
49436621 - 49452042
15422
ENSAPLT00000017297
49437113 - 49458919
21807