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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4944119_4945611_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4944119 - 4945611
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
AATCATGTAATC
Flanking Amino Acid:
HDKGREHPEEGKHPDSGLYS
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
80.3
0.68
0.7
75.3
26.8
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
45.3
-0.3
2
56.3
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007492
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007820
4902666 - 4946867
44202