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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49480925_49484146_R

Intron Information:

Intron Rank:
129936
Intron Class:
major
Intron Phase:
Intron Coordinates:
49480925 - 49484146
Intron Length:
3222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017100
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045944
49480165 - 49484591
4427
ENSAPLT00000038066
49475088 - 49484591
9504