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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49505134_49511352_R

Intron Information:

Intron Rank:
151021
Intron Class:
major
Intron Phase:
Intron Coordinates:
49505134 - 49511352
Intron Length:
6219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.5
28.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.6
0.64
0.9
71.7
38.7
Minor 5ss
32.3
-2
2.6
35.1
34.3
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027318
49505057 - 49515578
10522