Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49507658_49511352_R

Intron Information:

Intron Rank:

151019

Intron Class:

major

Intron Phase:

Intron Coordinates:

49507658 - 49511352

Intron Length:

3695

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTCCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCATCAT

U12 Branch Point Sequence:

TTTTGTCCAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

79.5

28.2

Major BPS

75.6

0.64

1.1

76.2

37.5

Major PPT

78.7

0.65

0.9

74.4

35.3

Minor 5ss

32.3

-2

2.6

35.1

34.3

Minor BPS

48.8

-0

2.2

72.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028751

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025671

49507566 - 49515578

8013