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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49528040_49528738_R

Intron Information:

Intron Rank:
132467
Intron Class:
major
Intron Phase:
Intron Coordinates:
49528040 - 49528738
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TACATTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
83.2
0.75
0.9
77.1
37.1
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
48.8
-0
1.5
63.63
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018540
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038931
49525173 - 49529403
4231