About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49565852_49570721_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49565852 - 49570721
Intron Length:
4870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TTCTCTGGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTGTCTTTGTCT
Flanking Amino Acid:
HTGEKPFQCDVCDLSFSLKK
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.1
34
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
67.3
0.39
1
61.2
40.1
Minor 5ss
36.5
-1.5
2.9
44.7
43.5
Minor BPS
48.5
-0
3.5
82.48
39.6

Associated Gene:

Gene:
PRDM5
Ensembl Gene ID:
ENSAPLG00000013828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026121
49565687 - 49627795
62109
ENSAPLT00000026027
49565687 - 49651534
85848
ENSAPLT00000024769
49565687 - 49651534
85848
ENSAPLT00000014440
49565687 - 49651534
85848
ENSAPLT00000035714
49565687 - 49651534
85848