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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49570827_49583860_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49570827 - 49583860
Intron Length:
13034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCACTCACTT
Flanking Amino Acid:
LKMHIRTHTREKPYQCSECN
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.3
0.64
0.9
73.2
36.2
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
49.3
0.02
2
74.92
41.8

Associated Gene:

Gene:
PRDM5
Ensembl Gene ID:
ENSAPLG00000013828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026121
49565687 - 49627795
62109
ENSAPLT00000026027
49565687 - 49651534
85848
ENSAPLT00000024769
49565687 - 49651534
85848
ENSAPLT00000014440
49565687 - 49651534
85848
ENSAPLT00000035714
49565687 - 49651534
85848