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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49597340_49598993_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49597340 - 49598993
Intron Length:
1654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GAAACTTTCATT
Flanking Amino Acid:
TPSVLKSHKKTHTGEKEKIC
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.9
33.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.8
0.69
0.8
77.5
31.2
Minor 5ss
31.4
-2.1
2.7
33.6
35.4
Minor BPS
49
0
1.7
63.48
40.8

Associated Gene:

Gene:
PRDM5
Ensembl Gene ID:
ENSAPLG00000013828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026121
49565687 - 49627795
62109
ENSAPLT00000024769
49565687 - 49651534
85848
ENSAPLT00000014440
49565687 - 49651534
85848
ENSAPLT00000035714
49565687 - 49651534
85848