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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49605808_49612343_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49605808 - 49612343
Intron Length:
6536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
CTTTCATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCATC
Flanking Amino Acid:
HRNVYKNHKKTHSEERPFQC
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.5
0.75
0.8
77.7
29.8
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
63.8
0.42
1.7
73.46
38.5

Associated Gene:

Gene:
PRDM5
Ensembl Gene ID:
ENSAPLG00000013828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035714
49565687 - 49651534
85848
ENSAPLT00000026121
49565687 - 49627795
62109
ENSAPLT00000024769
49565687 - 49651534
85848
ENSAPLT00000014440
49565687 - 49651534
85848