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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49613878_49619744_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49613878 - 49619744
Intron Length:
5867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGAG
5'SS Class:
major
3'SS Sequence:
GCTCATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATCATTAAAT
Flanking Amino Acid:
SATNLQEHRKVHETFECQEC
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.3
72.3
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79
0.65
0.9
72.4
37.3
Minor 5ss
27.4
-2.6
2.9
31.5
42.8
Minor BPS
71.5
0.75
1.7
88.06
36.1

Associated Gene:

Gene:
PRDM5
Ensembl Gene ID:
ENSAPLG00000013828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026121
49565687 - 49627795
62109
ENSAPLT00000024769
49565687 - 49651534
85848
ENSAPLT00000014440
49565687 - 49651534
85848