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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49613878_49636199_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49613878 - 49636199
Intron Length:
22322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATTTG
5'SS Class:
major
3'SS Sequence:
GCTCATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATCATTAAAT
Flanking Amino Acid:
QEQKNLAAIQVHETFECQEC
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
72.1
40.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79
0.65
0.9
72.4
37.3
Minor 5ss
41.8
-0.9
3.2
57.3
47.4
Minor BPS
71.5
0.75
1.7
88.06
36.1

Associated Gene:

Gene:
PRDM5
Ensembl Gene ID:
ENSAPLG00000013828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035714
49565687 - 49651534
85848