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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49623676_49625169_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49623676 - 49625169
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TTATCCCATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TATCCCATATAG
Flanking Amino Acid:
KFPVKQALQRHYEQHKEACR
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
72
0.5
0.9
66.8
34.4
Minor 5ss
31.8
-2.1
2.7
38.9
40.3
Minor BPS
46.6
-0.3
2
57.02
43.5

Associated Gene:

Gene:
PRDM5
Ensembl Gene ID:
ENSAPLG00000013828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024769
49565687 - 49651534
85848