About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49624030_49625169_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49624030 - 49625169
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TCCCACTTATTT
Flanking Amino Acid:
KFPVKQALQRHVLQCTENIN
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
71.3
0.53
1
61.3
37
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
31.8
-2.1
2.7
38.9
40.3
Minor BPS
49.5
0.05
1.8
66
44.9

Associated Gene:

Gene:
PRDM5
Ensembl Gene ID:
ENSAPLG00000013828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014440
49565687 - 49651534
85848
ENSAPLT00000026121
49565687 - 49627795
62109