Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49627202_49636199_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49627202 - 49636199

Intron Length:

8998

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGATTTG

5'SS Class:

major

3'SS Sequence:

TGGTTTGCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

ATTGCTTCTACT

Flanking Amino Acid:

QEQKNLAAIQEGENIFYLAV

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

72.1

40.4

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

67.3

0.39

1.1

62.3

43.3

Minor 5ss

41.8

-0.9

3.2

57.3

47.4

Minor BPS

50.7

0.1

74.36

42.4

Associated Gene:

Gene:

PRDM5

Ensembl Gene ID:

ENSAPLG00000013828

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024769

49565687 - 49651534

85848

ENSAPLT00000014440

49565687 - 49651534

85848