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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4966127_4968549_F

Intron Information:

Intron Rank:
143664
Intron Class:
major
Intron Phase:
Intron Coordinates:
4966127 - 4968549
Intron Length:
2423

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.8
73.8
42.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.5
0.82
0.7
84.1
30.4
Minor 5ss
29.3
-2.4
3.8
40.6
45.6
Minor BPS
52.5
0.08
1.9
71.73
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027412
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021877
4965579 - 4972602
7024