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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49678440_49679135_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49678440 - 49679135
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAAAC
5'SS Class:
major
3'SS Sequence:
GCTTATAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTGTCTCAACA
Flanking Amino Acid:
LPEEASGEGSGEPEPLEQQK
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
67.7
37.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
64.7
0.33
1
56
43.4
Minor 5ss
45.4
-0.5
2.7
60.5
44.2
Minor BPS
61.7
0.36
1.7
72
40

Associated Gene:

Gene:
NDNF
Ensembl Gene ID:
ENSAPLG00000018459
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037552
49675067 - 49695925
20859