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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4968615_4972560_F

Intron Information:

Intron Rank:
143665
Intron Class:
major
Intron Phase:
Intron Coordinates:
4968615 - 4972560
Intron Length:
3946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTTTTTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
79.7
0.67
0.8
74
29.6
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
55
0.14
2
73.67
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027412
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021877
4965579 - 4972602
7024