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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4968615_4991652_F

Intron Information:

Intron Rank:
143668
Intron Class:
major
Intron Phase:
Intron Coordinates:
4968615 - 4991652
Intron Length:
23038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCATCCTTACGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.3
0.66
0.9
73.6
35.9
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
59.8
0.39
2
76.34
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027412
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026902
4968381 - 5002880
34500