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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49721176_49728988_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49721176 - 49728988
Intron Length:
7813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTTACT
Flanking Amino Acid:
FPPDVQHKANDSSSEKGAHR
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
89.3
0.88
0.7
84.6
30.1
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
67
0.62
1.9
86.83
38.2

Associated Gene:

Gene:
TNIP3
Ensembl Gene ID:
ENSAPLG00000014144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014783
49720284 - 49769321
49038