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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49738303_49741248_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49738303 - 49741248
Intron Length:
2946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
GATGCTTTATGT
Flanking Amino Acid:
YECEISRLNKALKDVLQKKH
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
82.3
0.73
0.9
76.5
37.2
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
48.1
-0
2
65.32
45.3

Associated Gene:

Gene:
TNIP3
Ensembl Gene ID:
ENSAPLG00000014144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014783
49720284 - 49769321
49038