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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49741378_49744597_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49741378 - 49744597
Intron Length:
3220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
TTTTGCATCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCTCTGTATTT
Flanking Amino Acid:
LGRDRLSQEMKETKVLSEVL
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
53.4
44
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78.9
0.65
0.9
70.5
39.9
Minor 5ss
28.6
-2.5
3.5
34.7
43.7
Minor BPS
49.8
0.06
2.2
74.81
43.2

Associated Gene:

Gene:
TNIP3
Ensembl Gene ID:
ENSAPLG00000014144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014783
49720284 - 49769321
49038