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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49746161_49747417_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49746161 - 49747417
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTGATAATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TCTTCCTGATAA
Flanking Amino Acid:
ILSLERQRRELLEVNKQWDH
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
76.9
34.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
70.4
0.46
1
62.3
42.2
Minor 5ss
47.5
-0.2
2.8
64.9
46.3
Minor BPS
55.5
0.17
1.9
69.67
42.3

Associated Gene:

Gene:
TNIP3
Ensembl Gene ID:
ENSAPLG00000014144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014783
49720284 - 49769321
49038