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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49747508_49749107_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49747508 - 49749107
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTTTTGAACT
Flanking Amino Acid:
EMEAPADLLESKHVLLTKKK
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
84.2
0.77
0.8
78.6
35
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
65.1
0.55
1.4
77.34
39.2

Associated Gene:

Gene:
TNIP3
Ensembl Gene ID:
ENSAPLG00000014144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014783
49720284 - 49769321
49038