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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49749195_49759757_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49749195 - 49759757
Intron Length:
10563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTCGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTAAAATACCT
Flanking Amino Acid:
NHQRASCSLKTRSETNSRGR
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
72
0.5
1
74
28.3
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
42
-0.5
2.2
65.32
44

Associated Gene:

Gene:
TNIP3
Ensembl Gene ID:
ENSAPLG00000014144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014783
49720284 - 49769321
49038