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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49759891_49769313_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49759891 - 49769313
Intron Length:
9423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGAC
5'SS Class:
major
3'SS Sequence:
TCTTTTTAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCTTTTTAAGC
Flanking Amino Acid:
MERCESKELDAE
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
62
36.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.9
0.67
0.9
78.2
33.9
Minor 5ss
35.7
-1.6
3.5
49.3
47.3
Minor BPS
58.6
0.25
1.7
64.58
42.1

Associated Gene:

Gene:
TNIP3
Ensembl Gene ID:
ENSAPLG00000014144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014783
49720284 - 49769321
49038