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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49810057_49812677_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49810057 - 49812677
Intron Length:
2621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GATGCAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATGTCTTGATG
Flanking Amino Acid:
SPMWHVQRLEEEEASNCYDG
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
66.1
0.36
1
60
44.7
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
55.1
0.02
1.5
56.55
39.4

Associated Gene:

Gene:
QRFPR
Ensembl Gene ID:
ENSAPLG00000014381
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045171
49809955 - 49823550
13596