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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49813243_49823210_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49813243 - 49823210
Intron Length:
9968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGCGTGCC
5'SS Class:
major
3'SS Sequence:
CTGACTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ACTTTCTGACTA
Flanking Amino Acid:
LQNISSNWLGGAFACKMVPF
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
60.8
38.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
72.9
0.52
1
66.1
39.4
Minor 5ss
27.9
-2.5
3.2
36
41
Minor BPS
50.3
0
1.7
61.69
39.1

Associated Gene:

Gene:
QRFPR
Ensembl Gene ID:
ENSAPLG00000014381
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024943
49810031 - 49823550
13520
ENSAPLT00000022500
49809805 - 49823550
13746
ENSAPLT00000015003
49807431 - 49823550
16120
ENSAPLT00000045171
49809955 - 49823550
13596