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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49907467_49908491_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49907467 - 49908491
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
GTTATATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTATATTAACA
Flanking Amino Acid:
FAKSLHQMIQKDTSGDYRKA
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72.2
0.5
1
66.6
43
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
63.7
0.43
1.6
74.14
36.8

Associated Gene:

Gene:
ANXA5
Ensembl Gene ID:
ENSAPLG00000004530
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004698
49906958 - 49928668
21711