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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49908615_49910697_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49908615 - 49910697
Intron Length:
2083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TAATATTTAAAC
Flanking Amino Acid:
FAETLYYSMKGAGTDDDTLI
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
88.4
0.86
0.6
84.8
22.9
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
59.4
0.27
1.6
67.13
37.5

Associated Gene:

Gene:
ANXA5
Ensembl Gene ID:
ENSAPLG00000004530
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004698
49906958 - 49928668
21711