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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49910596_49910697_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
49910596 - 49910697
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
CAAATGCCAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCTTTCACT
Flanking Amino Acid:
FAETLYYSMKDTVSLNICKR
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
100
1.24
0.5
100
0
Major PPT
55.3
0.12
1
47.6
39.9
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
72.5
0.79
1.7
87.23
39

Associated Gene:

Gene:
ANXA5
Ensembl Gene ID:
ENSAPLG00000004530
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027520
49909506 - 49928668
19163