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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49921258_49922354_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49921258 - 49922354
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTAACCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCTTTCTAACC
Flanking Amino Acid:
EALRKAMKGMGTDEDTILKI
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.5
37.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77.6
0.62
0.8
75.2
33.4
Minor 5ss
34.3
-1.8
2.9
37.3
39.7
Minor BPS
63.3
0.4
1.6
74.1
37

Associated Gene:

Gene:
ANXA5
Ensembl Gene ID:
ENSAPLG00000004530
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004698
49906958 - 49928668
21711
ENSAPLT00000027520
49909506 - 49928668
19163