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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49945789_49945890_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49945789 - 49945890
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTGTTTTAACA
Flanking Amino Acid:
PMAAPGFEPGRQSELLVKLN
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
84.2
0.77
0.9
81
35.4
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
75.7
0.8
1.2
82.25
33.1

Associated Gene:

Gene:
EXOSC9
Ensembl Gene ID:
ENSAPLG00000004920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005116
49945172 - 49949695
4524