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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49945994_49946431_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49945994 - 49946431
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATTACCA
Flanking Amino Acid:
ESLCVVAGEKVWQIRVDLHL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
95.5
1.02
0.5
95.9
14.1
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
57.4
0.23
1.9
69.72
42.3

Associated Gene:

Gene:
EXOSC9
Ensembl Gene ID:
ENSAPLG00000004920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005116
49945172 - 49949695
4524