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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49946570_49946983_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49946570 - 49946983
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATTTTATAAAT
Flanking Amino Acid:
VSVQGEEVTVYSPEERDPVP
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.5
41.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.6
0.51
1
71.6
37.9
Minor 5ss
36.1
-1.6
3
47.2
43.4
Minor BPS
55.2
0.24
1.7
73.59
36.6

Associated Gene:

Gene:
EXOSC9
Ensembl Gene ID:
ENSAPLG00000004920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005116
49945172 - 49949695
4524