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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49947067_49947345_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49947067 - 49947345
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGTGA
5'SS Class:
major
3'SS Sequence:
ACTTTGATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTATATTTAAAA
Flanking Amino Acid:
ICVSFAFFQQGTYLLVDPSE
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.6
41.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
72.1
0.5
0.9
63.2
42.4
Minor 5ss
35.7
-1.6
3.2
38.1
46.8
Minor BPS
65
0.47
1.6
74.76
36

Associated Gene:

Gene:
EXOSC9
Ensembl Gene ID:
ENSAPLG00000004920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005116
49945172 - 49949695
4524