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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49948700_49948998_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49948700 - 49948998
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACAGAAAC
Flanking Amino Acid:
EDASTISKAKDEPIVLSDSE
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.9
0.72
0.7
73.1
31.7
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
49.6
-0
2
71.37
38.7

Associated Gene:

Gene:
EXOSC9
Ensembl Gene ID:
ENSAPLG00000004920
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005116
49945172 - 49949695
4524