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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49953678_49954177_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49953678 - 49954177
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTAGT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ACGTCTTCAAAT
Flanking Amino Acid:
AGYTITGQTWPESLCKVTGY
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
72.9
44.2
Major BPS
77.3
0.68
1
81.5
27
Major PPT
91.7
0.94
0.6
91.6
19.7
Minor 5ss
35.9
-1.6
3
42.6
44.2
Minor BPS
54.3
0.21
1.7
67.66
43.2

Associated Gene:

Gene:
CCNA2
Ensembl Gene ID:
ENSAPLG00000005183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005362
49953044 - 49957349
4306