Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49955475_49956058_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49955475 - 49956058

Intron Length:

584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

TTTCTCATGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTGCTCTTAACT

Flanking Amino Acid:

LVGTAAMLLASKFEEIYPPE

Intron Amino Acid Position:

223

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.3

70.3

35.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

77.2

0.61

74.2

35.2

Minor 5ss

33.5

-1.9

3.2

40.6

40.2

Minor BPS

79.9

1.02

1.1

89.1

35.4

Associated Gene:

Gene:

CCNA2

Ensembl Gene ID:

ENSAPLG00000005183

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005362

49953044 - 49957349

4306