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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49956283_49956620_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49956283 - 49956620
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCTAAACCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTTGTCCAAACT
Flanking Amino Acid:
DIHTYLREMEVKCKPKIGYM
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
71.1
0.48
0.9
62.5
38.5
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
52.7
0.16
2.1
79.84
42.4

Associated Gene:

Gene:
CCNA2
Ensembl Gene ID:
ENSAPLG00000005183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005362
49953044 - 49957349
4306