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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49956737_49956979_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49956737 - 49956979
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGTGAG
5'SS Class:
major
3'SS Sequence:
GTCTTCCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTGTCTTCCATG
Flanking Amino Acid:
PLGNAMELSCDSPSIMDISI
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
63.8
42.6
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.7
0.49
0.9
66.7
34.6
Minor 5ss
31.4
-2.1
3.3
40.1
45.9
Minor BPS
48.2
-0.2
2
58.84
43.8

Associated Gene:

Gene:
CCNA2
Ensembl Gene ID:
ENSAPLG00000005183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005362
49953044 - 49957349
4306