Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_49957199_49957240_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

49957199 - 49957240

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GCG|GCGGGGAGC

5'SS Class:

major

3'SS Sequence:

CCTCAGCCTCAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCCTCAG

U12 Branch Point Sequence:

CCCGCCTCAGCC

Flanking Amino Acid:

CGGGELSAAGAQQPPQPQPF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.1

0.36

1.3

38.6

Major BPS

46.3

-0.2

1.6

53.3

44.2

Major PPT

57.4

0.17

1.1

52.5

36.8

Minor 5ss

15.9

-3.9

3.7

24.6

37.4

Minor BPS

45.3

-0.3

1.9

49.78

46.8

Associated Gene:

Gene:

CCNA2

Ensembl Gene ID:

ENSAPLG00000005183

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005362

49953044 - 49957349

4306